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ababa
2007 Oct 03
1
Making a table: collapsing across sub-strings
...pears in this set.
This is not very difficult and can be done as:
TB<-table(my_set)
plot(TB)
However, I also want to collapse across sub-strings. This is, I want a
sub-string ss of string S to be counted as an occurrence of string S.
So, 'abab' should be included in the count of 'ababaaa' and should not
be listed as a separate entry in the frequency table.
Does somebody has a pointer to a way to do this? I have been checking
out the CRAN packages for handling DNA sequences, but this has not
really brought me closer to a solution.
Thanks,
Dieter Vanderelst
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