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...ults\</OutputFilePath> <FilesList> <File> <Characteristic Type="File" eName="FileTypeId" eValue="10"/> <Characteristic Type="File" eName="FilePath" eValue="D:\CN_data\Agilent\TCGA-06-0875-01A-01D-0387-02_US23502331_251469343372_S01_CGH-v4_10_Apr08.txt"/> <Characteristic Type ="Patient" eName="PatientReference" eValue="TCGA-06-0875-01A"/> <Characteristic Type ="Patient" eName="SampleType" e...

Hello, I would like to fit generalized linear mixed models but I did not find the package allowing such procedure. R help under nlme package gives me "glmmPQL(MASS)" but this file does not appear in contributed packages. Thanks in advance for your answer. Alexandre MILLON -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read

An r hel search picks up http://tolstoy.newcastle.edu.au/R/help/01a/1162.html from 2001, which points towards the ts package. >>> ?hagen Patrik <Patrik.Ohagen at mpa.se> 19/08/2008 09:00:12 >>> Dear List, I have used all my resources (i.e. "help.search) and I still havn't been able to figure out if there is an Exponential Smoo...

Dear All, What is the easiest way to create a package bundle in R? I have three packages I would like to group together in which one package will depends on three others. It looks like from http://tolstoy.newcastle.edu.au/R/help/01a/0284.html, all that is required is to put require in the .First? I wonder how one can create a package so that when it is downloaded, all the other packages are downloaded and installed as well? In my case, the three sub packages are not written by me and are already in R so I would like to keep t...

Hello all! I have a problem to arrange data in another form. My initial data is like this: 'data.frame': 421 obs. of 58 variables: $ 01A: num NA NA NA NA NA NA NA NA NA NA ... $ 01B: num NA NA NA NA NA NA NA NA NA NA ... $ 03A: num NA NA NA NA NA NA NA NA NA NA ... $ 03B: num NA NA NA NA NA NA NA NA NA NA ... $ 05A: num NA NA NA NA NA NA NA NA NA NA ... $ 05B: num NA NA NA NA NA NA NA 3.64 2.48 1.87 ... $ 07A: num NA NA...

Hi all, May be there is a plot which shows 3 variables in a triangle, their sum being constant. I have forgotten its name, and a search in the engine using "plot" did not help. Does anyone know of such a procedure in R or S? Thank you --christian Dr.sc.math.Christian W. Hoffmann Mathematics and Statistical Computing Landscape Dynamics and Spatial Development Swiss Federal Research

Hi everyone. There's been several threads on baseline hazard in Cox model but I think they were all on cumulative baseline hazard, for instance http://tolstoy.newcastle.edu.au/R/help/01a/0464.html http://tolstoy.newcastle.edu.au/R/help/01a/0436.html "basehaz" in package survival seems to do a cumulative hazard. extract from the basehaz function: sfit <- survfit(fit) H <- -log(sfit$surv) Since sfit$surv is monotonic, H will be monotonic too, which makes m...

...faster), and uses significantly less memory. Finally, please note these tests were purely about compilation speed, not about the performance of the resulting executables. This still needs to be tested. -Dimitry [1]: Also available at: <http://www.andric.com/freebsd/perftest/perftest-2012-09-01a.txt> -------------- next part -------------- COMPILER PERFORMANCE TESTS ON FREEBSD 10.0-CURRENT, SEPTEMBER 2012 ================================================================== INTRODUCTION ------------ The compilers tested were: - gcc 4.2.1, the system compiler in FreeBSD, which is compile...

Hi, Sorry for the question, but there is any package that contains the Naive Bayes classifier? Thanks Hugo -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To:

...ysis data using >dat<-read.table("C:\\file.txt", header=T, row.names=1) for example: > dat1<-read.table("C:\\US82800149_251976011000_S01_GE2_105_Dec08.txt", > header=T, row.names=1) > dat<-read.table("C:\\unc.edu__AgilentG4502A_07_3__TCGA-A6-2674-01A-02R-0821-07__gene_expression_analysis.txt", > header=T, row.names=1) in all cases I get the error "more columns than column names" I have only been able to read in the level II data with the code: > dat2<-read.table("C:\\US82800149_251976011000_S01_GE2_105_Dec08.tx...

Dear R People: Is there a function for exponential smoothing, please? R version 1.4.1 for Windows. Thanks in advance! Have a great weekend! Sincerely, Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown 1 Main Street Houston, TX 77002 mailto: hodgess at uhddx01.dt.uh.edu

Full_Name: Frederic Schutz Version: 1.6.1 OS: Linux Submission from: (NULL) (128.250.252.193) The subject says everything... This has already been proposed in June 2001 (cf http://maths.newcastle.edu.au/~rking/R/help/01a/2333.html), but no reply followed. I attach the patch that I used on my system to add this feature (including an updated help page), if it can help. Sorry, the two "diff..." lines will certainly been wrapped due to the HTML form. Frederic diff -ur R-1.6.1.old/src/library/eda/R/medpolis...

Hi, I've been trying to pass a character vector from R to a FORTRAN subroutine. There have been several posts discussing this issue (e.g. http://tolstoy.newcastle.edu.au/R/help/98a/0547.html, http://tolstoy.newcastle.edu.au/R/help/05/10/13558.html, http://tolstoy.newcastle.edu.au/R/help/01a/2577.html, http://tolstoy.newcastle.edu.au/R/help/01c/1795.html, http://tolstoy.newcastle.edu.au/R/devel/03a/0620.html, http://tolstoy.newcastle.edu.au/R/devel/99b/0323.html). According to R-exts (section 5.2, Interface functions .C and .Fortran), there are severe limitations on this: "Only th...

Platform: Windows 98 R version: Version 1.6.1 (2002-11-01) Package 'tseries' version: 0.9-4 Built: R 1.6.0; Win32; Mon Oct 7 14:02:38 2002) (dependanted packages 'quadprog': Built: R 1.5.1; Win32; 2002-07-03 12:20:50) I've just upgraded to R 1.6.1. By typing library(tseries) example(garch) => I've got a crash with the following message: "RGUI a causé une

Platform: Windows 98 R version: Version 1.6.1 (2002-11-01) Package 'tseries' version: 0.9-4 Built: R 1.6.0; Win32; Mon Oct 7 14:02:38 2002) (dependanted packages 'quadprog': Built: R 1.5.1; Win32; 2002-07-03 12:20:50) I've just upgraded to R 1.6.1. By typing library(tseries) example(garch) => I've got a crash with the following message: "RGUI a causé une

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Hi all, I have created forest plots using the package "meta" that I submitted as pdf for publication. I just received an email from the editor asking me if I could send these files in an Excel or MS Word format such that they can treat them as tables with box plots. I am not sure if I can do this... Is this possible? I've tried the capture.output command, but I get a blank MS Word

Howdy, We occassionally get the following error when running our nightly backups: rsync error: received SIGUSR1 or SIGINT (code 20) at rsync.c(229) This happens more on one or two machines than on any of the others. We've looked high and low to see if we're mistakenly sending these signals, but nothing is that we can find. Does anyone know what this might be from? Is it the server

Hi, I just came across this box [0] (McKay Creek). Seems to be exceptional building material for ZFS based NAS/iSCSI unit. I especially liked the two extra system disks hidden inside the box ! Any one have an experience with these ? [0] http://www.intel.com/design/servers/storage/ssr212mc2 -- Regards, Cyril